usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 34.9714761904762 35.6896190476191 32.9218095238095 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 820 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 484 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 474 Number of spheres polar: 223, nonpolar: 165, out of current total: 474 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.79976 44.54322 26.75538 44.93713 22.95473 42.85000 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 250 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 220 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 191 Spheres center of coords (x y z): 35.9510078010471 37.8990683769633 31.2017581675393 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.77685026811564 Final number of output spheres is: 60 Number of polar spheres: 37 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 21