usefragsph not on
There are 48 ligand heavy atoms
Ligand center of coords (x y z): 38.7651041666667 32.859 28.9267083333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1347
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 737
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 724
Number of spheres polar: 292, nonpolar: 214, out of current total: 724
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 28.77045 48.69196 22.96884 42.78347 18.94991 38.92548
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 423
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 376
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 321
Spheres center of coords (x y z): 39.3458933333333 34.0773658878505 27.0677628971962
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.52305307348152
Final number of output spheres is: 60
Number of polar spheres: 29
Number of nonpolar spheres: 21
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 48