usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): -0.34525 75.82275 18.0835 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 859 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 512 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 512 Number of spheres polar: 277, nonpolar: 131, out of current total: 512 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.31387 9.62740 66.02944 85.77206 8.09985 28.02877 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 175 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 142 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 103 Spheres center of coords (x y z): -3.05103252427184 80.8762027184466 20.1452910679612 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.52002047568517 Final number of output spheres is: 45 Number of polar spheres: 28 Number of nonpolar spheres: 8 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 8