usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): 24.7675 7.285125 35.991625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 952 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 535 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 535 Number of spheres polar: 252, nonpolar: 184, out of current total: 535 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.62635 34.74670 0.79387 17.24172 26.03106 45.94911 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 199 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 150 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 124 Spheres center of coords (x y z): 30.1654503225806 9.9964660483871 37.0677661290322 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.93025371828654 Final number of output spheres is: 45 Number of polar spheres: 32 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 8