usefragsph not on
There are 13 ligand heavy atoms
Ligand center of coords (x y z): -47.8253076923077 14.5541538461538 -21.5260769230769
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1392
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 973
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 973
Number of spheres polar: 381, nonpolar: 324, out of current total: 973
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -57.76521 -37.82821 4.68282 24.54295 -31.50622 -11.55477
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 339
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 287
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 264
Spheres center of coords (x y z): -46.3086295833333 13.2772374242424 -23.0463156818182
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 8.10454134236641
Final number of output spheres is: 45
Number of polar spheres: 15
Number of nonpolar spheres: 25
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 13