usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): -43.5606451612903 11.3821935483871 -21.937064516129 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1558 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 949 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 943 Number of spheres polar: 295, nonpolar: 377, out of current total: 943 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -53.55428 -33.63441 1.43371 21.38165 -31.88778 -11.94455 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 335 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 277 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 260 Spheres center of coords (x y z): -44.4247608076923 12.3540927692308 -22.8688648461538 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.02603508578911 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 31