usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): -43.5606451612903 11.3821935483871 -21.937064516129 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1558 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 949 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 943 Number of spheres polar: 295, nonpolar: 377, out of current total: 943 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -53.55428 -33.63441 1.43371 21.38165 -31.88778 -11.94455 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 545 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 460 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 432 Spheres center of coords (x y z): -44.4508049305556 12.552718125 -22.5992565509259 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.83616337305862 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 31