usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 24.6849411764706 9.96323529411765 36.8547058823529 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1245 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 697 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 694 Number of spheres polar: 262, nonpolar: 224, out of current total: 694 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.83091 34.45527 1.12952 19.69374 26.87844 46.85382 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 398 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 351 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 294 Spheres center of coords (x y z): 26.7087204421769 12.5587605102041 38.6348895578231 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.79907693057754 Final number of output spheres is: 60 Number of polar spheres: 32 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 17