usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): 23.763125 1.495875 36.191875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 817 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 497 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 497 Number of spheres polar: 267, nonpolar: 149, out of current total: 497 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.08474 33.73678 -8.43494 11.49256 26.23259 46.17117 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 252 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 202 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 139 Spheres center of coords (x y z): 28.5754390647482 4.27802417266187 35.4363809352518 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.97692114020326 Final number of output spheres is: 60 Number of polar spheres: 35 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 8