usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 24.89246875 53.580875 12.29375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1160 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 585 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 568 Number of spheres polar: 217, nonpolar: 179, out of current total: 568 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.90568 34.85879 43.58645 63.51368 2.31410 22.14043 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 344 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 300 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 260 Spheres center of coords (x y z): 23.1867211923077 53.8718943076923 10.8339560769231 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.8906582310162 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 32