usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 21.5775348837209 -5.20232558139535 10.865976744186 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1348 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 821 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 808 Number of spheres polar: 259, nonpolar: 281, out of current total: 808 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.65263 31.53209 -14.95613 4.74983 0.97507 20.84260 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 503 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 437 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 425 Spheres center of coords (x y z): 23.2882544 -5.34865329411764 11.5500848235294 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.45603906173085 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 43