usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 34.9714761904762 35.6896190476191 32.9218095238095 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 922 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 570 WARNING: removing a crystallographic sphere that is distance 1.01747186693294 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 556 Number of spheres polar: 235, nonpolar: 173, out of current total: 556 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.79976 44.96055 25.82603 44.93713 22.94742 42.85000 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 209 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 173 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 154 Spheres center of coords (x y z): 36.2895499350649 36.0991162337662 30.3787461038961 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.06855249514683 Final number of output spheres is: 45 Number of polar spheres: 26 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 20