Distance from surface specified: 1.80 There are 21 ligand heavy atoms Ligand center of coords (x y z): 34.9714761904762 35.6896190476191 32.9218095238095 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 10256 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 9202 WARNING: removing a crystallographic sphere that is distance 1.01747186693294 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 1.85036023519746 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 1.7140598005904 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 1.86943146437627 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 8795 Number of spheres polar: 5513, nonpolar: 2406, out of current total: 8795 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.55280 48.96040 21.73760 47.92940 18.94100 46.91740 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1170 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 698 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 667 Spheres center of coords (x y z): 36.9098533733133 36.5860824587707 33.1951547226387 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.3471654379163 Final number of output spheres is: 200 Number of polar spheres: 133 Number of nonpolar spheres: 55 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 17