usefragsph not on
There are 30 ligand heavy atoms
Ligand center of coords (x y z): 12.7395666666667 -9.3623 11.4877
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1962
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 925
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 924
Number of spheres polar: 218, nonpolar: 449, out of current total: 924
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.81204 22.73817 -19.34966 0.62599 1.49096 21.46339
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 351
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 297
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 285
Spheres center of coords (x y z): 12.0720668070175 -8.60678698245613 8.77637175438596
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.56063759470986
Final number of output spheres is: 45
Number of polar spheres: 12
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 30