usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 6.73518518518519 9.44514814814815 25.480037037037 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1617 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 866 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 865 Number of spheres polar: 282, nonpolar: 409, out of current total: 865 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.20575 16.67508 -0.48603 19.42312 15.52810 35.42400 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 471 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 399 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 338 Spheres center of coords (x y z): 8.41764402366864 8.41140340236687 23.8135180473373 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.99975275690774 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 27