usefragsph not on
There are 17 ligand heavy atoms
Ligand center of coords (x y z): 0.118 27.9669411764706 8.27752941176471
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1404
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 877
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 877
Number of spheres polar: 332, nonpolar: 400, out of current total: 877
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.81464 10.02805 18.03919 37.93182 -1.67781 18.23558
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 274
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 224
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 187
Spheres center of coords (x y z): 2.25841128342246 24.4678601069519 8.71477973262032
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.12586661824861
Final number of output spheres is: 45
Number of polar spheres: 26
Number of nonpolar spheres: 17
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 17