usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 10.5627931034483 -9.37431034482758 9.31813793103449 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1479 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 925 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 925 Number of spheres polar: 316, nonpolar: 429, out of current total: 925 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.63033 20.55413 -19.37420 0.58525 -0.53949 19.29715 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 302 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 245 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 220 Spheres center of coords (x y z): 10.3158941818182 -9.58970454545455 7.38151636363636 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.1623301241961 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 29