usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 33.2255555555556 46.7829444444444 19.1865555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1076 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 724 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 724 Number of spheres polar: 274, nonpolar: 334, out of current total: 724 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.26534 43.21723 36.91349 56.60105 9.27956 29.17580 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 355 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 313 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 278 Spheres center of coords (x y z): 31.2012148561151 45.4632988129496 21.1398494244604 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.77998696158851 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 18