usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 9.98211111111111 10.7356666666667 25.7639444444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1518 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 861 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 861 Number of spheres polar: 337, nonpolar: 312, out of current total: 861 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.01110 19.96922 0.73773 20.73388 15.82341 35.75905 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 288 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 240 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 222 Spheres center of coords (x y z): 9.23881743243243 11.2201505405405 27.8964176576577 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.49305459763858 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 18