usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): -9.5104347826087 48.7035217391304 38.0917826086957 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1561 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 821 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 821 Number of spheres polar: 288, nonpolar: 362, out of current total: 821 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.46186 0.48225 38.77668 58.64285 28.11152 47.51970 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 459 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 389 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 374 Spheres center of coords (x y z): -9.52372443850267 46.9190237433155 37.588024171123 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.48190129677422 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 23