usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 26.9566296296296 11.1795925925926 11.1705925925926 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1627 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 857 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 855 Number of spheres polar: 263, nonpolar: 390, out of current total: 855 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.97152 36.94549 1.21341 21.13507 1.20463 21.04963 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 478 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 404 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 353 Spheres center of coords (x y z): 27.3104529745042 8.40920053824362 11.0739641926346 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.36884016006439 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 27