usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): -9.10953571428571 48.3148571428572 11.8039642857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1397 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 761 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 761 Number of spheres polar: 229, nonpolar: 365, out of current total: 761 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -18.99700 0.88942 38.65893 58.30100 1.82412 21.70100 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 263 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 230 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 192 Spheres center of coords (x y z): -9.28215427083332 44.9591439583333 10.8263178645833 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.50268435176862 Final number of output spheres is: 45 Number of polar spheres: 25 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 28