usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -10.2632222222222 47.904037037037 10.6746296296296 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1425 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 796 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 795 Number of spheres polar: 241, nonpolar: 347, out of current total: 795 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.25651 -0.27043 38.10465 57.84193 0.72077 20.34422 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 277 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 230 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 201 Spheres center of coords (x y z): -9.80853164179105 45.2949064676617 10.285993880597 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.92548834919203 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 27