usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): -10.10532 48.44288 10.82196 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1363 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 804 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 804 Number of spheres polar: 231, nonpolar: 395, out of current total: 804 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.03341 -0.17026 38.44579 58.44055 0.92442 20.81184 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 276 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 226 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 201 Spheres center of coords (x y z): -10.6133992039801 46.2572295522388 10.4277702487562 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.85786655489516 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 25