usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 5.85033333333333 44.0838888888889 51.266962962963
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1240
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 774
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 774
Number of spheres polar: 228, nonpolar: 375, out of current total: 774
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.12517 15.80869 34.14361 54.04011 41.28700 61.25785
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 423
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 366
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 343
Spheres center of coords (x y z): 4.05929309037901 42.7778464723032 50.3204829446064
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.43744334389113
Final number of output spheres is: 60
Number of polar spheres: 24
Number of nonpolar spheres: 35
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 27