usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 6.09468 44.21312 51.13016
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1074
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 713
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 713
Number of spheres polar: 181, nonpolar: 347, out of current total: 713
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.49447 16.00400 34.30399 54.17158 41.15446 61.07587
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 406
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 359
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 337
Spheres center of coords (x y z): 4.25366421364986 42.6968148664689 49.8300843620178
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.50582449091923
Final number of output spheres is: 60
Number of polar spheres: 27
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 25