usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): 2.29045161290323 25.5837419354839 7.02548387096774
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1426
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 820
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 819
Number of spheres polar: 243, nonpolar: 383, out of current total: 819
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.70495 12.28545 15.62600 35.57217 -2.93089 17.00551
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 474
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 415
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 379
Spheres center of coords (x y z): 3.36507121372032 23.9838347493404 8.11100725593668
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.1528774553286
Final number of output spheres is: 60
Number of polar spheres: 19
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 31