usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 5.90292857142857 43.6691785714286 50.4479285714286
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1215
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 749
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 740
Number of spheres polar: 233, nonpolar: 334, out of current total: 740
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.08213 15.88755 33.68224 53.66204 40.60323 60.43449
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 426
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 371
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 346
Spheres center of coords (x y z): 4.4156012716763 42.6196352312139 50.0000784971098
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.36499312544579
Final number of output spheres is: 60
Number of polar spheres: 30
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 28