usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): 44.2344166666667 28.9336666666667 1.48458333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 607 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 521 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 520 Number of spheres polar: 171, nonpolar: 249, out of current total: 520 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.31422 53.09094 19.25143 38.87328 -8.47830 11.42665 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 302 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 264 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 232 Spheres center of coords (x y z): 44.6264663362069 26.735576637931 2.87123767241379 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.1487601452701 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 12