usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 13.0982608695652 -8.60243478260869 11.383347826087 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1755 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1057 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1057 Number of spheres polar: 324, nonpolar: 482, out of current total: 1057 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.13384 23.09529 -18.53543 1.36039 1.40378 21.29894 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 346 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 283 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 255 Spheres center of coords (x y z): 13.1364629411765 -7.44545650980392 7.81880423529412 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.22908005603127 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 23