usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 1.17511111111111 30.7568333333333 8.98327777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1555 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 847 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 847 Number of spheres polar: 232, nonpolar: 482, out of current total: 847 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.78955 11.16828 20.77713 40.75273 -0.99492 18.97792 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 270 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 229 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 167 Spheres center of coords (x y z): 2.70512700598802 26.3674224550898 9.21669329341317 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.63340088134343 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 18