usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 11.0993333333333 45.3782916666667 25.3320416666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1597 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 803 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 803 Number of spheres polar: 266, nonpolar: 343, out of current total: 803 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.15657 20.33016 35.40114 55.35308 15.38672 35.33133 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 449 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 387 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 333 Spheres center of coords (x y z): 10.2464117717718 44.7405884684685 29.2573445345345 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.67741999013895 Final number of output spheres is: 60 Number of polar spheres: 32 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 24