usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 24.7832608695652 42.9507826086956 8.52230434782609 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1745 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 899 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 899 Number of spheres polar: 280, nonpolar: 447, out of current total: 899 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.06441 34.69806 32.95872 52.89778 -1.45971 18.45335 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 286 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 233 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 185 Spheres center of coords (x y z): 23.6378003243243 46.7836469189189 8.59857394594594 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.65413214822128 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 23