usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 13.1287142857143 -8.19903571428571 11.0744285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1602 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 830 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 830 Number of spheres polar: 223, nonpolar: 401, out of current total: 830 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.22366 23.11745 -18.09410 1.80081 1.08097 20.81583 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 292 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 240 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 203 Spheres center of coords (x y z): 11.8505196551724 -8.66986344827586 8.44333453201971 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.32086076935205 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 28