usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 13.1287142857143 -8.19903571428571 11.0744285714286
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1602
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 830
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 830
Number of spheres polar: 223, nonpolar: 401, out of current total: 830
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.22366 23.11745 -18.09410 1.80081 1.08097 20.81583
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 474
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 418
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 359
Spheres center of coords (x y z): 12.1176291086351 -8.54044225626741 8.54487504178273
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.19002384615385
Final number of output spheres is: 60
Number of polar spheres: 26
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 28