usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -8.53077272727273 205.668864090909 112.123727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1295 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 749 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 749 Number of spheres polar: 236, nonpolar: 320, out of current total: 749 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -18.24403 1.45195 198.69972 215.66881 102.12739 122.11222 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 436 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 371 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 366 Spheres center of coords (x y z): -7.78444737704918 205.947265163934 113.798281885246 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.61005125678813 Final number of output spheres is: 60 Number of polar spheres: 33 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 22