usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): 27.264625 5.1445 64.53775 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 968 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 696 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 696 Number of spheres polar: 280, nonpolar: 292, out of current total: 696 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.32045 37.06128 -4.79980 15.13837 54.56259 74.49374 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 360 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 298 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 269 Spheres center of coords (x y z): 29.0358731970261 8.46021059479553 64.4591471375465 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.24457039070871 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 8