usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 23.3958095238095 27.9727142857143 28.3720952380952 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1486 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 857 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 857 Number of spheres polar: 326, nonpolar: 356, out of current total: 857 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.46989 33.37010 17.99023 37.96656 18.37410 38.36829 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 484 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 419 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 336 Spheres center of coords (x y z): 23.4715488095238 24.7930277380952 27.9427179464286 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.08722293221723 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 21