usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 80.2255769230769 64.7306923076923 55.6413461538462 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1409 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 758 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 756 Number of spheres polar: 237, nonpolar: 301, out of current total: 756 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 70.33426 90.17294 54.74468 74.61075 46.40556 65.61897 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 422 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 370 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 324 Spheres center of coords (x y z): 83.3466362962963 64.3044744444445 56.7828066975309 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.60319192296692 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 26