usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 0.368 26.5426129032258 8.53222580645161 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1627 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 888 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 888 Number of spheres polar: 282, nonpolar: 427, out of current total: 888 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.59294 10.35154 16.58061 36.52813 -1.44726 18.51667 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 300 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 253 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 202 Spheres center of coords (x y z): 2.03264346534653 22.9950025247525 8.52179465346534 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.52826850001987 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 31