usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): -7.67832 203.8172812 112.26824 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1255 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 679 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 679 Number of spheres polar: 247, nonpolar: 241, out of current total: 679 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.63505 2.22201 196.66974 213.76100 102.29822 122.24836 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 403 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 355 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 335 Spheres center of coords (x y z): -7.545636 204.280788985075 113.178168 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.24253322882143 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 25