usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 11.1970555555556 46.8786111111111 24.9093888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1470 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 899 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 899 Number of spheres polar: 303, nonpolar: 350, out of current total: 899 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.21086 20.94019 36.93700 56.84634 14.91773 34.89356 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 498 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 433 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 408 Spheres center of coords (x y z): 9.78017031862745 46.8373023284314 26.9652037745098 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.16189525314451 Final number of output spheres is: 60 Number of polar spheres: 33 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 18