usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 26.1330714285714 27.7289285714286 27.1526071428572 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1196 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 733 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 733 Number of spheres polar: 218, nonpolar: 369, out of current total: 733 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.19085 36.00349 17.74801 37.72740 17.18989 36.82347 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 233 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 200 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 167 Spheres center of coords (x y z): 25.3004441317365 24.1836938922156 25.9655544311377 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.55215839938163 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 28