usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 1.92242857142857 28.2723214285714 9.00210714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1877 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 969 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 969 Number of spheres polar: 400, nonpolar: 384, out of current total: 969 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.76818 11.78248 18.28041 38.15454 -0.95916 18.98758 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 534 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 461 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 404 Spheres center of coords (x y z): 1.97191284653466 25.0791939356435 10.1155124752475 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.67226896162801 Final number of output spheres is: 60 Number of polar spheres: 36 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 28