usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 37.3168888888889 134.10136962963 32.1854814814815 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1272 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 795 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 791 Number of spheres polar: 244, nonpolar: 362, out of current total: 791 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 27.54617 47.14040 124.16309 143.42628 22.36361 41.92090 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 410 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 359 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 318 Spheres center of coords (x y z): 37.1500309748428 132.463082012579 34.2910798113208 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.11478474119887 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 27