usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 26.764125 29.9801875 8.4154375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1295 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 782 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 782 Number of spheres polar: 306, nonpolar: 374, out of current total: 782 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.84625 36.71606 20.00400 39.97469 -1.56256 18.40792 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 422 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 361 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 272 Spheres center of coords (x y z): 28.65320875 25.4105782352941 8.78979227941177 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.9876848560039 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 16