usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 27.0470357142857 28.8345357142857 26.7461071428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1389 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 737 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 737 Number of spheres polar: 275, nonpolar: 320, out of current total: 737 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.07292 37.04482 18.88773 38.81701 16.77315 36.60703 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 417 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 346 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 290 Spheres center of coords (x y z): 24.9898353793103 26.2734076551724 27.1662102413793 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.53317415705211 Final number of output spheres is: 60 Number of polar spheres: 29 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 28