usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): -4.84864705882353 -24.2307352941176 23.2150882352941 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1436 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 868 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 868 Number of spheres polar: 273, nonpolar: 369, out of current total: 868 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -14.83368 4.46183 -34.15884 -14.33940 13.23635 33.18413 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 288 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 244 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 224 Spheres center of coords (x y z): -3.29797044642857 -25.0046640178571 24.5243760714286 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.12723355870406 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 34