usefragsph not on
There are 33 ligand heavy atoms
Ligand center of coords (x y z): 4.42254545454546 43.7282121212121 51.004
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1040
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 612
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 612
Number of spheres polar: 172, nonpolar: 272, out of current total: 612
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.76552 14.38391 34.17679 53.66827 41.21315 60.87699
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 341
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 300
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 266
Spheres center of coords (x y z): 2.76293827067669 43.3290995488722 51.2213989849624
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.47661609560579
Final number of output spheres is: 60
Number of polar spheres: 16
Number of nonpolar spheres: 30
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 33