usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 122.928260869565 106.934130434783 31.5396086956522 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1279 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 741 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 741 Number of spheres polar: 213, nonpolar: 374, out of current total: 741 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 112.97386 132.84293 96.94600 116.89818 21.55070 41.50411 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 427 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 372 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 349 Spheres center of coords (x y z): 124.345704297994 107.616990830946 34.2425681375358 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.04998102720876 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 23